Beans and bacteria – a complex story of communication

The symbiotic relationship between legumes and soil bacteria has been known for well over a century. The intimate details of this relationship, however, are only recently being revealed. It is a very active area of research as understanding this symbiotic relationship could lead to strategies that help reduce the environmental impacts of food production. 
Rhizobia nodules on the roots of cowpea
(Vigna unguiculata). By Stdout
[GFDL (http://www.gnu.org/copyleft/fdl.html),
via Wikimedia Commons.
Special soil bacteria – known as rhizobia – reside within the nodules of legumes, such as peas, lentils, beans, alfalfa and clover, which are found along the roots of these plants. The bacteria take nitrogen from the air and convert it into ammonia, which the plant is able to use – a process known as nitrogen “fixing”.
This allows legumes to grow well in nitrogen-poor soils. This nitrogen is taken up in the plant material, which can then be worked back into the soil as a natural fertiliser for subsequent crops.
While this all might sound very straight forward – there are details about this relationship that remain unclear. How do the bacteria get into the nodules? Are there signals that the plant uses to stimulate the bacteria to produce nitrogen?

An answer to a century-old debate

In 2011, researchers from the John Innes Centre in Norwich answered the mystery of how nitrogen-fixing bacteria crossed the cell walls into the nodules of legumes. 
It had been a century-old debate as to whether bacteria produced the enzymes to break down the cell walls or whether the plant did. The researchers showed that it was the plant which supplied the enzymes to break down its cell walls in order to give the bacteria access.

How legumes communicate with their symbiotic bacteria

In 2010, Stanfordresearchers discovered the gene in plants that triggered the chemical signal required for the bacteria to fix nitrogen. They found that the rhizobia bacteria would just sit around in the legume nodules if the plant failed to produce the protein that’s required to spur the bacteria into nitrogen fixing mode. This was only part of the communication story.
It is energetically costly for the plant to produce and maintain the root nodules in which the bacteria live; usually the benefit of having a supply of nitrogen outweighs this cost. If there is sufficient useable nitrogen in the soil, however, the plant is able to reduce the number of nodules on its roots.
Communication between the shoots of the plant and the roots of the plant help regulate the number of nodules. The leaves transmit a signal to the roots to either develop more or get rid of rood nodules, depending on circumstances. The roots communicate back up to the leaves using molecules known as peptides.
Research published recently has now discovered that the plant shoots use plant hormones, known as cytokinins, which travel down the phloem into the roots to help regulate nodule development.

The environmental benefits of understanding legumes

Understanding the symbiotic relationship between legumes and soil bacteria is not simply a matter of scientific curiosity. The ability for legumes to produce natural nitrogen fertilisers is a trait that US researchers would like to potentially transfer to non-legume crops as a way of reducing the environmental impact of agriculture.
Manufacturing nitrogen fertilisers for non-legumes is extremely resource intensive. It has been estimated that to produce 68 kg (150 lbs) of nitrogen fertiliser – enough for one acre of corn – would be the equivalent of driving a car 1,046 km (650 miles).
Beyond that, nitrogen fertilisers release the powerful greenhouse gas, nitrous oxide, after they’ve been applied. Excess fertilisers also runoff agricultural land into rivers and lakes and eventually out into the ocean. This influx of nitrogen can provoke algal blooms and create oxygen deplete dead zones.

Therefore, there is great incentive to fully understand this relationship legumes have with soil bacteria. The environmental impact of agriculture could be significantly reduced by utilising legumes with their natural nitrogen fertiliser more by using them in more marginal land and using traditional breeding programs to select for drought resistance or temperature tolerance. In some countries, genetic engineering might even be used to introduce nitrogen-fixing abilities into non-legume species. Genetic modification, however, can be an inflammatory issue with considerable debate as to its pros and cons, particularly with respect to its use in food products.

The strawberry timebomb: how basic plant biology can help you store your produce

Two days ago I purchased an alarmingly large number of strawberries. I couldn’t help myself. Grown in Cheddar, these sweet little ripe morsels are a welcome break from the onslaught of last year’s apples and a plethora of citrus. When you try to eat seasonally and with reduced transportation miles, you appreciate the appearance of new season fruit that much more.
Non-climacteric fruit, such as strawberries, do not continue to ripen once picked
Strawberries have to be picked at their peak of ripeness as
they don’t ripen any further once they’re separated from the
plant – known as non-climacteric fruit.
Photo credit: Nicola Temple

The moment I placed the box on my kitchen counter, however, I felt as though a timer began counting down on a bomb. But rather than finishing off with an explosion, it would be more of a moldy, decayed mess of fruit wasting away. In response, I did as my mother before me did, and I issued relentless alarm calls to my family, “Eat strawberries…strawberries would go well with that…why are you eating that pear? EAT strawberries!” Luckily the troops rallied and I’m happy to report that there was no waste.

This strawberry time bomb is more technically that stage between when a fruit has reached its peak ripeness and when it first starts to deteriorate. Strawberries, unlike some other fruits, do not continue to ripen when picked and so they have to be picked when they are perfectly ripe otherwise they will taste somewhat inferior. The rotting timer starts the minute the strawberry is picked and is running down from field (or poly tunnel) to consumer. So why is it that strawberries don’t ripen further after they’re picked, but fruits like tomatoes do?

Ethylene and rapid respiration: qualities of the climacteric fruit

The answer lies in some basic plant physiology. Some fruits produce a lot of ethylene and undergo rapid respiration during ripening, which means the fruits continue to ripen even once they are separated from the plant. These are known as climacteric fruits. As one would expect, non-climacteric fruits produce very little ethylene, do not undergo periods of rapid respiration and do not ripen any further once picked from the plant.
Ethylene plays a major role in the regulation of the ripening process and affects the rate at which the fruit ripens. Producers use this to their advantage. Bananas, for example, are picked hard and green and stored mature but unripe. When a retailer places an order, the bananas are placed in a room and ethylene is pumped in to ripen the fruit up for sale.
Ethylene is even used by industry as a de-greening agent for non-climacteric fruits, such as citrus. It is used to break down the green chlorophyll pigment in the peel of many citrus fruits, like orange and lemon, which essentially makes a somewhat unripe fruit appear ripe to the consumer.
The genetic regulation behind the climacteric characteristics of plants is very complex and not yet completely understood. For example, different melon varieties can be climacteric or non-climacteric. If a climacteric melon is crossed with a non-climacteric melon, the fruit is generally climacteric, suggesting it might be a genetically dominant character trait. Yet, other experiments that have crossed two non-climacteric melons have generated climacteric melons. This implies that the trait is more complex than a dominantly inherited trait.

Examples of climacteric versus non-climacteric fruits

There may be a few items on these lists that make you take a second look as we don’t commonly think of them as fruits, but rather as vegetables. However, aubergines, courgettes and cucumbers are indeed fruits.
Climacteric Fruits
Non-climacteric fruits
Apple
Aubergine
Apricot
Bell peppers
Avocado
Cherries
Banana
Citrus fruits
Cantaloupe
Courgettes
Fig
Cucumber
Kiwi
Grapes
Mango
Lychee
Passion fruit
Most berries
Peach
Pomegranate
Pear
Strawberries
Plum
Pineapples
Tomato
Watermelon

How to store climacteric fruits and non-climacteric fruits

Tomatoes are a climacteric fruit - they continue to ripen after picking.
Different varieties of tomatoes, a climacteric fruit, on
display at a French market. Photo credit: Shelby Temple.

Knowing the difference between your climacteric and non-climacteric fruits can help you store them appropriately.

Climacteric fruits are best stored at room temperature. They are picked before they are ripe and refrigeration can slow the ripening process. Since these fruits will continue to ripen after picking, they generally have a shorter shelf-life, but refrigerating them once they have fully ripened could extend the shelf life somewhat. 
Non-climacteric fruits, on the other hand, are picked when fully ripe and are best stored in the refrigerator to slow their deterioration. They generally have a longer shelf-life as they don’t continue to ripen (though I don’t consider this to be true of berries).
Don’t store climacteric fruits with non-climacteric fruits as the ethylene produced by fruits such as bananas can speed up the rotting process of an already ripe fruit. However, this natural ethylene production can also work to your advantage. Avocados, for example, are often sold hard as rocks and if you wish to speed up the ripening process, you can store them with bananas in a paper bag on the counter.

The climacteric character of fruit is an active area of research due to the direct applications for the way we pick, transport and store our food. As much as I am an advocate for scientific solutions, I hope overindulging on the sweet delicious fruit of local strawberries during this precious time of year is never resolved – it is simply a matter of tradition.

The science of nectar

Nectar is that sweet reward that flowering plants provide animals in exchange for their services as pollinators. It sounds incredibly simple on one level – much like rewarding a dog with a treat after it obeys a command. However, dig a little deeper and you realise that the reproductive success of the plant is dependent on very subtle yet complex characteristics of this substance – including when it’s produced and how much is produced, as well as its very composition.
Flowering plants will optimise the characteristics of their nectar in order to influence the foraging behaviours of pollinators and ultimately improve their reproductive fitness. The characteristics of the nectar not only determine which pollinators are attracted and when they come, but how frequently they visit and how long they stay. Suddenly one realises that there is an extremely complex system of regulatory mechanisms behind nectar secretion, which have not only influenced the evolution of flowering plants, but of the pollinators themselves.
Red admiral butterfly close up
Red Admiral butterfly (Vanessa atalanta) drinking nectar. 
Photo credit: Shelby Temple.

Nectar isn’t just about sugar

But before we get into the evolution, let’s first consider what nectar is, because as it turns out it’s not just about sugar – there are a number of things in nectar that are important for pollinators.
There is no denying, however, that carbohydrates – sugars such as glucose, sucrose and fructose – are usually the main constituent of nectar. Nectar will be anywhere between 7 to 70 % carbohydrates per water weight [1]. Other sugars might also be present in small amounts as well as sugar alcohols, such as sorbitol. It is these sugars that are the primary energy source for nectar consumers.
Amino acids and proteins are the next most abundant solute in nectar after the sugars. There are essential and non-essential amino acids, which are the building blocks for proteins and there are some non-protein amino acids that are constituents of enzymes and preservatives. It is thought that the amino acid and protein content of nectar may play a role in the taste preferences of insects [1], presumably related to their nutritional needs.
The water content of nectar may also be an important reward for pollinators, particularly in dry habitats.
Nectar also contains important ions, such as potassium, as well as antioxidants, trace amounts of lipids and some secondary compounds that seem to be associated with resistance to herbivory. 
Macro photography bee
A bee gathering its nectar reward in the Botanic Garden.
Photo credit: Shelby Temple.
Many species have also been shown to have antimicrobial compounds in their nectar, which prevents microbes from growing in the nectar as well as inhibiting florally transmitted diseases [2].
Terpinoids, which are the volatile organic compounds that give flowers their scent, also accumulate in the nectar.
The composition and consistency of nectar is extremely variable as it is tuned to the needs of the nectarivores (it’s a word…really). Flowers frequented by hummingbirds, for example, generally produce nectar in small amounts with high sugar content, while those frequented by more generalist passerine birds produce dilute nectar in large quantities. There has been some evidence that honeybees have a preference for warmer nectar that’s less viscous, regardless of the sugar concentration [3]. Bats also seem to prefer less viscous nectar, though will preferentially select more dilute nectar as the water content is extremely important for their rehydration.

Not all nectar is produced in the flower

Nectar is produced in glands known as nectaries. The glands are commonly found at the base of flowers, where they produce nectar as a reward for pollinators. However, there are also extrafloral nectaries located elsewhere on the plant, often on the leaves or petiole – the stalk that attaches the leaf blade to the stem. These nectaries provide a reward for mutualistic animals, almost exclusively ants, which benefit the plant. The ants help protect certain plant species by getting rid of the eggs of herbivorous insects deposited on the foliage and in return they feast on the nutrient rich nectar secreted by the extrafloral nectaries.
Extrafloral nectaries might be particularly critical at certain times in the plant’s lifecycle. For example, there are often nectaries located on the pedicelthat secrete nectar when the flowers are in bud. This attracts ants, which help protect the vulnerable flower buds from herbivorous insects and improves the reproductive success of the plant [4].
Unlike nectar produced in the flower, nectar produced in the extrafloral nectaries is far less variable as it is attracting mostly ants.

Darwin’s orchid: a classic example of the coevolution of flowering plants and their pollinators

Producing nectar may use up to 37% of a plant’s available energy [5]. This means that producing it comes with some cost to the plant, but these costs are clearly outweighed by the benefits of attracting pollinators that are far more efficient than relying on wind or water.
The evolution of flowering plants and their pollinators is the most frequently used example of coevolution – the physical characteristics of both flower and animal evolving to become more specialised. It was around 120 million years ago that honeybees developed longer tongues than their short-tongued ancestors in order to access the nectar reward flowers had started to produce. Their social structure became more complex and they became fuzzier and developed pollen baskets in order to carry protein-rich pollen, but also facilitating their role as pollinators.
Darwin’s orchid in bloom at the Botanic
Garden last year. Photo credit: Andy Winfield.
The flowers also changed shape in response to the preferences of their pollinators. The most classic of these examples is Darwin’s orchid (Angraecum sesquipedale) with a flower depth of 20 to 35 centimetres. The Madagascar orchid was named after Darwin because he proposed, based on its shape alone, that it had to be pollinated by an insect with a proboscis of lengths unheard of at the time. Forty years later, Morgan’s sphinx moth (Xanthopan morganii), was discovered with an unusually large proboscis…and it was indeed the pollinator of this orchid.
It is also thought that nectar chemistry itself has evolved in response to pollinators. As mentioned earlier, bats prefer nectar with low sugar concentrations and as a result bat pollinated plants from very diverse and distantly related taxonomic groups have evolved nectar with low sugar concentrations.

Deceit and robbing

Not all flowers use nectar – some have non-rewarding flowers. Around 30-40% of species within the orchid family do not produce rewarding nectar in their flowers [6] and instead use different methods to attract pollinators. Orchid flowers may look like another species that provides nectar or they may mimic shelters or brood-sites or even pollinators themselves in order to draw the attentions of individuals looking for a place to shelter or for a potential mate (such as in bumble-bee orchids).
Just as plants have found ways to get pollinated without producing nectar, some animals have found ways to get nectar yet avoid being pollinators. Some flower visitors – known as nectar robbers – will avoid the normal route to the nectar, usually avoiding the floral opening all together and pierce or bite the flower elsewhere to extract the nectar directly without coming into contact with any of the reproductive parts.
For many years it was thought that nectar robbers had a negative or neutral effect on the plants, but over the last couple of decades, research has shown they can also have a positive effect on the plant. Firstly, some nectar robbers do ultimately end up pollinating the plants. Secondly, their presence can modify the behaviours of the pollinators. For example, if flowers have less nectar (because the robbers have extracted some) then pollinators will visit more flowers, increase their foraging range, travel further distances and spend less time at each flower – all of which could improve cross pollination and increase genetic diversity. Maloof et al [7] provide a good review on this topic.  
There has been extensive research done on the characteristics of nectar and its relationship with pollinators. More recent research, however, is starting to unravel the mechanisms by which plants produce nectar – identifying some of the pathways sugars are transported within the plant and concentrated in their nectar [8]. There is still lots to learn.

Sources:

[1] Pacini E, Nicolson SW (2007). Chapter 1: Introduction, In: Nicolson SW, Nepi M, Pacini E (Eds.) Nectaries and Nectar. Springer: The Netherlands. ISBN: 978-1-4020-5936-0. (pages 8-10).
[2] Sasu MA, Wall KL, Stephenson AG (2010). Antimicrobial nectar inhibits a florally transmitted pathogen of a wild Cucurbita pepo (Cucurbitaceae). American Journal of Botany 97 (6): 1025-1030. (link)
[3] Nicolson SW, de Veer L, Köhler A, Pirk CWW. Honeybees prefer warmer nectar and less viscous nectar, regardless of sugar concentration (link).
[4] Bentley BL (1977). The protective function of ants visiting the extrafloral nectaries of Bixa orellana (Bixaceae). J. Ecol. 65 (1): 27.38.
[5] Pyke GH (1991). What does it cost a plant to produce floral nectar? Nature 350: 58-59. doi: 10.1038/350058a0
[6] Johnson SD, Hobbhahn N, Bytebier B (2013). Ancestral deceit and labile evolution of nectar production in the African orchid genus Disa. Biol. Lett. 9 (5): 20130500. doi: 10.1098/rsbl.2013.0500.
[8] Lin IW et al.(2014). Nectar secretion requires sucrose phosphate synthases and the sugar transporter SWEET9. Nature 508: 546-549. doi: 10.1038/nature13082